I've been avoiding including songs that reference rain, the sky, and other 'commonplace' terms but am open-minded about loosening up...
Rock You Like a Hurricane, Scorpions
Idioteque, Radiohead
Flashing Lights, Kanye West
The Game, Common
Forever Begins, Common
Eleanor Put Your Boots On, Franz Ferdinand
Sleeping In, Postal Service
Honey Honey, Feist
The PV song, Nick Hall and John Thuburn (thanks Paul O'Gorman) link
It's The End Of The World As We Know It (And I Feel Fine), REM
Mutron Angel, Outkast
Theologians, Wilco
Guerilla Monsoon Rap, Talib Kweli
Absolut Vorticity, Dargan Frierson link
Bad Moon Rising, Creedence Clearwater Revival