1. Eiler, J.M., Baumgartner, L.P. and Valley, J.W. (1992) Intercrystalline stable isotope diffusion: a fast grain boundary model. Contrib. Mineral. Petrol., v. 112, p. 543-557.

2. Eiler, J.M., Valley, J.W. and Baumgartner, L.P. (1993) A new look at stable isotope thermometry. Geochim. Cosmochim. Acta., v. 57, p. 2571-2583.

3. Eiler, J.M., Baumgartner, L.P. and Valley, J.W. (1994) FAST GRAIN BOUNDARY: a FORTRAN-77 program for calculating the effects of retrograde interdiffusion of stable isotopes. Comput. Geosci., v. 20, p. 1415-1434.

4. Eiler, J.M. and Valley, J.W. (1994) Preservation of pre-metamorphic oxygen isotope ratios in meta-igneous rocks from the Adirondack mountains, NY. Geochim. Cosmochim. Acta., v. 58, p. 5525-5535.

5. Eiler, J.M., Valley, J.W., Graham, C.M. and Baumgartner, L.P. (1995) Ion microprobe evidence for the mechanisms of stable-isotope retrogression in high-grade metamorphic rocks. Contrib. Mineral. Petrol., v. 118, p. 365-378.

6. Eiler, J.M., Valley, J.W., Graham, C.M. and Baumgartner, L.P. (1995) The oxygen isotope anatomy of a slowly cooled metamorphic rock. American Mineralogist, v. 80, p. 757-764.

7. Eiler, J.M., Farley, K., Valley, J.W., Stolper, E.M. Hauri, E., and Craig, H. (1995) Oxygen Isotope evidence against bulk recycled sediment in the source of Pitcairn Island lavas. Nature, v.377, p. 138-141.

8. Eiler, J.M. , Stolper, E.M. and Valley, J.W. (1996) Oxygen isotope ratios in olivine from the Hawaiian scientific drilling project. Journal of Geophysical Research, v. 101, p. 11,807-11,813.

9. Eiler, J.M., Farley, K.A., Valley, J.W., Hofmann, A., and Stolper, E.M. (1996) Oxygen isotope constraints on the sources of Hawaiian volcanism. Earth and Planetary Science Letters, v. 144, p. 453-468.

10. Eiler, J.M., Graham, C.M., and Valley, J.W. (1996) SIMS Analysis Of Oxygen Isotopes: Matrix Effects In Complex Minerals And Glasses, Chemical Geology, 138, 221-244.

11. Eiler, J.M., Farley, K.A., Valley, J.W., Hauri, E., Craig, H., Hart, S.R., and Stolper, E.M. (1997) Oxygen isotope variations in ocean island basalt phenocrysts. Geochim. Cosmochim. Acta, 61, 2281-2293.

12. Eiler, J.M., Mojzsis, S., and Arrhenius, G. (1997) Carbon isotope evidence for life, Nature 386, 665.

13. Valley, J.W., Eiler, J.M., Graham, C.M., Gibson, E., Romanek, C. and Stolper, E.M. (1997) Low temperature carbonate concretions in the martian meteorite ALH84001: Evidence from stable isotopes and mineralogy, Science 275, 1633-1638.

14. Reeder, R.J., Valley, J.W., Graham, C.M. and Eiler, J.M. (1997) Ion microprobe study of oxygen isotopic compositions of structurally nonequivalent growth surfaces on synthetic calcite. Geochimica et Cosmochimica Acta 61, 5057-5063.

15. Eiler, J.M., Farley, K.A., and Stolper, E.M. (1998) Correlated He and Pb isotope variations in Hawaiian lavas. Geochimica et Cosmochimica Acta, 62, 1977-1984.

16. Eiler, J.M., McInnes, B., Valley, J.W., Graham, C.M., and Stolper, E.M. (1998) Oxygen isotope evidence for slab-derived fluids in the sub-arc mantle, Nature 393, 777-781.

17. Garcia, M.O., Ito, E., Eiler, J.M., and Pietruszka, A.J. (1998) Crustal contamination of Kilauea Volcano magmas revealed by oxygen isotope analyses of glass and olivine from Puu Oo eruption lavas. Journal of Petrology, 39, 803-817.

18. Graham, C.M., Valley, J.W., Eiler, J.M., and Wada, H. (1998) Timescales and mechanisms of fluid infiltration in a marble: an ion microprobe study. Contributions to Mineralogy and Petrology, 132, 371-389.

19. Valley, J.W., Graham, C.M., Harte, B., Eiler, J.M. and Kinny, P.D. (1998) Ion microprobe analysis of oxygen, carbon and hydrogen isotope ratios, in M.A. McKibben and W.C. Shanks (eds.), Applications of Microanalytical Techniques to Understanding Mineralizing Processes, SEG Reviews in Economic Geology, Vol. 7, p. 73-98.

20. Foster, C.T., Reagan, M.K., Kennedy, S.G., Smith, G.A., White, C.A., Eiler, J.E. and Rougvie, J.R. (1999) Insights into the proterozoic geology of the Park Range, Colorado. Rocky Mountain Geology, 34, 7-20.

21. Eiler, J.M., Crawford, A., Elliott, T., Farley, K.A., Valley, J.W., and Stolper, E.M., (2000) Oxygen isotope geochemistry of oceanic-arc lavas. Journal of Petrology, 41, 229-256.

22. Eiler, J.M., Kitchen, N., and Rahn, T. (2000) Experimental constraints on the stable isotope systematics of CO2 ice/vapor systems and relevance to the study of Mars. Geochimica et Cosmochimica Acta, 64, 733-746.

23. Eiler, J.M., Schiano, P., Kitchen, N. and Stolper, E.M. (2000) Oxygen isotope evidence for recycled crust in the sources of mid-ocean ridge basalts. Nature, 403, 530-534.

24. Schiano, P., J.M. Eiler, and E.M. Stolper (2000) CaO-rich, silica-undersaturated melts in island arcs: Evidence for the involvement of clinopyroxene-rich lithologies in the petrogenesis of arc magmas. G-cubed, 1, # 1999GC00032.

25. Eiler, J.M., K. Gronvold, and N. Kitchen (2001) Oxygen isotope evidence for the origin of chemical variations in lavas from Theistareykir volcano in Iceland’s northern volcanic zone. Earth Planet. Sci. Let., 184, 269-286.

26. Eiler, J., and N. Kitchen (2001) Hydrogen-isotope analysis of nanomole (picoliter) quantities of H2O. Geochim. Cosmochim. Acta, 65, 4467-4479.

27. Eiler, J.M. (2001) Oxygen isotope variations of basaltic lavas and upper mantle rocks. in ‘Stable Isotope Geochemistry’ (MSA, Reviews in Mineralogy series, volume 43), edited by J.W. Valley and D. R. Cole, p. 319-364.

28. Rahn, T., and J.M. Eiler (2001) Experimental constraints on the fractionation of 13C/12C and 18O/16O ratios of carbon dioxide due to adsorption at conditions relevant to the surface of Mars. Geochim. Cosmochim. Acta, 65, 839-846.

29. Appora, I., J.M. Eiler, A. Matthews, and E.M. Stolper (2002) Experimental determination of oxygen isotope fractionation between CO2 vapor and soda-melilite melt. Geochim. Cosmochim. Acta., 67, 459-471.

30. Ducea, M., Sen, G., Eiler, J. and Fimbres, J. (2002) Melt depletion and subsequent metasomatism in the shallow mantle beneath Koolau volcano, Oahu (Hawaii). G-cubed, 3, U1-U17.

31. Eiler, J.M., J.W. Valley, C.M. Graham, and J. Fournelle (2002) Two generations of carbonate in ALH84001: Geochemical evidence for distinctions and genesis. Geochim. Cosmochim. Acta, 66, 1285-1303.

32. Eiler, J.M., Kitchen, N. Leshin L. and Strausberg M.J. (2002) Hosts of hydrogen in Allan Hills 84001: Evidence for hydrous martian salts in the oldest martian meteorite? Met. Planet. Sci., 37, 395-405.

33. King, R.L., M.J. Kohn, and J.M. Eiler (2002) Constraints on the petrologic structure of the subduction zone slab-mantle interface from Franciscan complex exotic ultramafic blocks. Geol. Soc. Am. Bull.

34. Rahn, T., N. Kitchen, and J.M. Eiler (2002) D/H ratios of atmospheric H2 in urban air: Results using new methods for analysis of nano-molar H2 samples. Geochim. Cosmochim. Acta, 66, 2475-2481.

35. Rahn, T., N. Kitchen, and J.M. Eiler (2002) Concentration and ∂D of molecular hydrogen in boreal forests: Ecosystem-scale systematics of atmospheric H2. Geophys. Res. Lett., 29, art. no. 1888.

36. Eiler, J.M. (2003) Introduction, in Inside the Subduction Factory, Geophysical Monograph 138, p. 1-6.

37. Eiler JM, Tromp TK, Shia RL, Allen M, Yung YL (2003) The Bush Administration and hydrogen – Response. Science 302 (5649): 1332-1333.

38. Eiler JM, Tromp TK, Shia RL, Allen M, Yung YL (2003) Assessing the future hydrogen economy – Response. Science 302 (5643): 228-229.

39. Maclennan, J., D. McKenzie, K. Gronvold, N. Shimizu, J.M. Eiler and N. Kitchen (2003) Melt mixing and crystallization under Theistareykir, NE Iceland. G3.

40. Rahn, T., J.M. Eiler, K.A. Boering, P.O. Wennberg, M.C. McCarthy, S. Tyler, S. Schauffler, S. Donelly, E. Atlas (2003) Extreme deuterium enrichment in stratospheric hydrogen and the global atmospheric budget of H2. Nature 424, 918-921.

41. Tromp, T.K., R-L Shia, M. Allen, J.M. Eiler and Y.L. Yung (2003) Potential environmental impact of a hydrogen economy on the stratosphere. Science 300, 1740-1742.

42. Wang, Z., N.E. Kitchen and J.M. Eiler (2003) Oxygen isotope geochemistry of the second HSDP core. Geochemistry Geophysics Geosystems 4, art. no.-8712.

43. Cooper, K., J.M. Eiler, P. Asimow, and C. Langmuir (2004) Oxygen isotope evidence for the origin of enriched mantle beneath the mid-Atlantic ridge. Earth and Planetary Science Letters 220, 297-316.

44. Eiler, J.M. and Kitchen, N. (2004) Hydrogen isotope evidence for the origin and evolution of the CM chondrites. Geochimica et Cosmochimica Acta 68, 1395-1411.

45. Eiler, J.M., and E. Schauble (2004) 18O13C16O in earth's atmosphere. Geochimica et Cosmochimica Acta, 68, 4767-4777.

46. Kent, A.J.R., E.M. Stolper, D. Francis, J. Woodhead, R. Frei and J. Eiler (2004) Mantle heterogeneity during the formation of the North Atlantic Igneous Province: Constraints from trace-element and Sr-Nd-Os-O isotope systematics of Baffin Island picrites. Geochemistry Geophysics Geosystems 5: Art. No. Q11004.

47. McCarthy, M.C., K. A. Boering, T. Rahn, J.M. Eiler, A.L. Rice, S.C. Tyler, s. Schauffler, E. Atlas and D.G. Johnson (2004) The hydrogen isotopic composition of water vapor entering the stratosphere inferred from high-precision measurements of ∂D-CH4 and ∂D-H2. Journal of Geophysical Research 109, D07304, doi:10.1029/2003JD004003

48. Wang, Z., E. A. Schauble and J. M. Eiler (2004) Equilibrium thermodynamics of multiply-substituted isotopologues of molecular gases. Geochimica et Cosmochimica Acta, 68, 4779-4797.

49. Bindeman IN, Eiler JM, Yogodzinski GM, Tatsumi Y, Stern CR, Grove TL, Portnyagin M, Hoernle K, Danyushevsky LV (2005) Oxygen isotope evidence for slab melting in modem and ancient subduction zones. Earth and Planetary Science Letters 235 (3-4): 480-496

50. Eiler JM, Carr MJ, Reagan M, Stolper E (2005) Oxygen isotope constraints on the sources of Central American arc lavas. Geochemistry Geophysics Geosystems 6: Art. No. Q07007.

51. Gaffney AM, Nelson BK, Reisberg L, Eiler J (2005) Oxygen-osmium isotope systematics of West Maui lavas: A record of shallow-level magmatic processes. Earth and Planetary Science Letters 239 (1-2): 122-139.

52. Saal AE, Hart SR, Shimizu N, Hauri EH, Layne GD, Eiler JM (2005) Pb isotopic variability in melt inclusions from the EMI-EMII-HIMU mantle end-members and the role of the oceanic lithosphere. Earth and Planetary Science Letters 240 (3-4): 605-620.

53. Wade JA, Plank T, Stern RJ, Tollstrup DL, Gill JB, O'Leary JC, Eiler JM, Moore RB, Woodhead JD, Trusdell F, Fischer TP, Hilton DR (2005) The May 2003 eruption of Anatahan volcano, Mariana Islands: Geochemical evolution of a silicic island-arc volcano. Journal of Volcanology and Geothermal Research 146 (1-3): 139-170

54. Affek, H.P. and Eiler J.M. (2006) Abundance of mass-47 CO2 in urban air, car exhaust and human breath. Geochimica et Cosmochimica Acta 70, 1-12.

55. Bindeman IN, Sigmarsson O, Eiler J (2006) Time constraints on the origin of large volume basalts derived from O-isotope and trace element mineral zoning and U-series disequilibria in the Laki and Grimsvotn volcanic system. Earth and Planetary Science Letters 245 (1-2): 245-259.

56. Eiler J., Garzione C., Ghosh P. (2006) Response to comment on "Rapid uplift of the altiplano revealed through C-13-O-18 bonds in paleosol carbonates". Science, 314 (5800): doi:10.1126/science.1133131.

57. Ghosh P., Adkins J., Affek H., Balta B., Guo W., Schauble E.A., Schrag D., and Eiler J.M. (2006) 13C-18O bonds in carbonate minerals: A new kind of paleothermometer. Geochimica et Cosmochimica Acta 70, 1439-1456.

58. Ghosh P., Eiler, J.M. and Garzione, C. (2006) Rapid uplift of the Altiplano revealed in abundances of 13C—18O bonds in paleosol carbonate. Science 311, 511-515.

59. Schauble, E.A., Ghosh P., and Eiler J.M. (2006) Preferential formation of 13C-18O bonds in carbonate minerals, estimated using first-principles lattice dynamics. Geochimica et Cosmochimica Acta 70, 2510-2529.

60. Smith-Downey NV, Randerson JT, Eiler JM (2006) Temperature and moisture dependence of soil H-2 uptake measured in the laboratory. Geophysical Research Letters 33 (14): Art. No. L14813

61. Affek, HP, Xu, XM, and Eiler, JM (2007) Seasonal and diurnal variations of 13C-18O-16O in air: Initial observations from Pasadena, CA, Geochimica et Cosmochimica Acta, 71, 5033-5043.

62. Bindeman, IN, Eiler, JM, Wing, BA, and Farquhar, J (2007) Rare sulfur and triple oxygen isotope geochemistry of volcanogenic sulfate aerosols. Geochimica et Cosmochimica Acta, 71, 2326-2343.

63. Came, RE, Eiler, JM, Veizer, J, Azmy, K, Brand, U and Weidman, CR (2007) Coupling of surface temperatures and atmospheric CO2 concentrations during the Palaeozoic era. Nature, 449, 198-.

64. Eiler, J.M. (2007) “Clumped Isotope” geochemistry – The study of naturally-occurring, multiply-substituted isotopologues. Earth and Planetary Science Letters, 262, 309-327.

65. Eiler J.M. (2007) On the origins of granites. Science 315, 951-952.

66. Eiler J.M., Schiano P., Valley J.W., Kita N.T. and Stolper E.M. (2007) Oxygen-isotope and trace element constraints on the origins of silica-rich melts in the subarc mantle. Geochemistry Geophyisics Geosystems 8, Art. No. Q09012.

67. Eiler J.M. (2007) The oldest fossil or just another rock? Science 317, 1046-1047.

68. Ghosh, P, Eiler, J, Campana, SE, and Feeney, RF (2007) Calibration of the carbonate 'clumped isotope' paleothermometer for otoliths. Geochimica et Cosmochimica Acta, 71, 2736-2744.

69. Gou W. and Eiler J.M. (2007) Temperatures of aqueous alteration and evidence for methane generation on the parent bodies of the CM chondrites. Geochimica et Cosmochimica Acta, 71, 5565-5575.

70. O'Leary, JA, Rossman, GR, and Eiler, JM (2007) Hydrogen analysis in minerals by continuous-flow mass spectrometry. American Mineralogist, 92, 1990-1997.

71. Quade, J., Garzione C., and Eiler J. (2007) Peleoelevation reconstruction using pedogenic carbonates. In Paleoaltimetry: Geochemical and Thermodynamic Approaches, MSA volume 66, 53-87.

72. Affek HP, Bar-Matthews M, Ayalon A, Eiler JM et al. (2008) Glacial/interglacial temperature variations in Soreq cave speleothems as recorded by 'clumped isotope' thermometry. Geochimica et Cosmochimica Acta 72, p. 5351-5360.

73. Garcia, MO, Ito, E, Eiler, JM (2008) Oxygen isotope evidence for chemical interaction of Kilauea historical magmas with basement rocks. Journal Of Petrology, 49, 757-769.

74. Garzione CN, Hoke GD, Libarkin JC, Withers S, MacFadden B, Eiler J, Mulch A (2008) Rise of the Andes. Science 320, p. 1304-1307.

75. Putnam MC, Filler MA, Kayes BM, Eiler, JM et al. (2008) Secondary Ion Mass Spectrometry of Vapor-Liquid-Solid Grown, Au-Catalyzed, Si Wires. Nano Letters 8, p. 3109-3113.

76. Smith-Downey NV, Randerson JT, Eiler JM (2008) Molecular hydrogen uptake by soils in forest, desert, and marsh ecosystems in California. Journal of Geophysical Research-Biogeosciences 113, #G03037.

77. Wang ZR, Eiler JM (2008) Insights into the origin of low-delta O-18 basaltic magmas in Hawaii revealed from in situ measurements of oxygen isotope compositions of olivines. Earth and Planetary Science Letters 269, p. 376-386.

78. Workman RK, Eiler JM, Hart SR, and Jackson, MJ (2008) Oxygen isotopes in Samoan lavas: Confirmation of continent recycling. Geology, 36, 551-554.

79. Cooper KM, Eiler JM, Sims KWW et al. (2009) Distribution of recycled crust within the upper mantle: Insights from the oxygen isotope composition of MORB from the Australian-Antarctic Discordance. Geochemistry Geophysics Geosystems 10, #Q12004.

80. Guo WF, Mosenfelder JL, Goddard WA, Eiler, JM et al. (2009) Isotopic fractionations associated with phosphoric acid digestion of carbonate minerals: Insights from first-principles theoretical modeling and clumped isotope measurements. Geochimica Et Cosmochimica 73, p. 7203-7225.

81. Huntington KW, Eiler JM, Affek HP, et al. (2009) Methods and limitations of 'clumped' CO2 isotope (Delta(47)) analysis by gas-source isotope ratio mass spectrometry. Journal Of Mass Spectrometry 44, p. 1318-1329.

82. Hofmann AE, Valley JW, Watson EB, Eiler JM, et al. (2009) Sub-micron scale distributions of trace elements in zircon. Contributions To Mineralogy And Petrology 158, p. 317-335.

83. Yeung, LY, HP Affek, KH Hoag, AA Wiegel, EL Atlas, SM Schauffler, M Okumura, KA Boering and JM Eiler (2009) Large and unexpected enrichment in stratospheric 18O-13C-16O, and its meridional variation. Proceedings of the National Academy of Sciences, 106, 11496-11501.

84. Boyce JW, Liu Y, Rossman GR, Guan YB, Eiler JM, Stolper EM, Taylor LA (2010) Lunar apatite with terrestrial volatile abundances. Nature v. 466, 466-U2

85. Chemtob SM, Jolliff BL, Rossman GR, Eiler JM and Arvidson RE (2010) Silica coatings in the Kau desert, Hawaii, a Mars analog terrain: a micro-morphological, spectral, chemical and isotopic study. Journal of Geophysical Research-Planets 115, Article Number: E04001

86. Dauphas N, Remusat L, Chen JH, Roskosz M, Papanastassiou DA, Stodolna J, Guan Y, Ma C, Eiler JM (2010) Neutron-rich chromium isotope anomalies in supernova nanoparticles. Astrophysical Journal 720, 1577-1591.

87. Eagle RA, Schauble EA, Tripati AK, Tutken T, Hulbert RC, Eiler JM (2010) Body temperatures of modern and extinct vertebrates from C-13-O-18 bond abundances in bioapatite. Proceedings Of The National Academy Of Sciences Of The United States Of America 107, 10377-10382.

88. Huntington KW, Wernicke BP, Eiler JM (2010) Influence of climate change and uplift on Colorado Plateau paleotemperatures from carbonate clumped isotope thermometry. Tectonics 29, Article Number: TC3005.

89. Passey BH, Levin NE, Cerling TE, Brown FH, Eiler JM (2010) High-temperature environments of human evolution in East Africa based on bond ordering in paleosol carbonates. Proceedings of the National Academy of Sciences of the United States of America 107, 11245-11249.

90. Remuset L, Guan Y, Wang Y and Eiler JM (2010) Accretion and preservation of organic particles in carbonaceous chondrites: evidence for important transport in the early solar system nebula. Astrophysical Journal 713, 1048-1058.

91. Tripati A, Thiagarajan, Eagle R, Gagnon A, Bauch H and Eiler J (2010) Equilibrium 13C-18O isotope signatures and ‘clumped isotope’ thermometry in foraminifera and coccoliths. Geochimica et Cosmochimica Acta, 74, 5697-5717.

92. Bristow TF, Bonifacie M, Derkowski A, Eiler JM and Grotzinger JP (In press) A hydrothermal origin for isotopically anomalous cap dolostone cements from South China. In press in Science.

93. Daeron M, Guo W, Eiler J, Genty D, Blamart D, Boch R, Drysdale R, Maire R, Wainer K and Zanchetta G (In press) 13C-18O clumping in speleothems (I) Observations from natural caves and precipitation experiments. In press in Geochimica et Cosmochimica Acta.

94. Dennis, KJ, Affek HP, Passey BH, Schrag DP, and Eiler JM (In review) Defining an absolute reference frame for ‘clumped’ isotope studies of CO2. In review in Geochimica et Cosmochimica Acta.

95. Eagle RA, Tutken T, Martin TS, Tripati AK, Fricke HC, Connely M, Cifelli RL and Eiler JM (In review) Direct measurement of dinosaur body temperatures from the analysis of isotopic (13C-18O) ordering in fossil biominerals. In review in Science.

96. Eiler, JM, McCanta MC and Stolper EM (In press) Intra- and inter-crystalline oxygen isotope variations in minerals from basalts and peridotites In press in Journal of Petrology.

97. Ferry JM, Passey BH, Vasconcelos C and Eiler JM (In review) Formation of dolomite at 40-80 °C in the Latemar carbonate buildup, Dolomites, Italy, from clumped isotope thermometry. In review in Geology.

98. Finnegan S, Bergmann K, Fischer WW, Jones DS, Fike DA, Hughes NC, Tripati A, and Eiler JM (In review) Constraints on the duration and magnitude of Late Ordovician-Early Silurian glaciation. In review in Science.

99. Guo W, Daëron M, Niles P, Goddard WA, Eiler JM (In press) Isotopic fractionations associated with degassing of CO2 from aqueous solutions: implications for carbonate clumped isotope thermometry. In press in Geochimica et Cosmochimica Acta.

100. Guo W, Veizer J, Frauenstein F and Eiler JM (In review) Temperature and oxygen isotopic composition of the Paleoproterozoic ocean. In review in Science.

101. Huntington KW, Budd DW, Wernicke BP, and Eiler JM (In review) Use of clumped isotope thermometry to constrain temperature of crystallization for diagenetic calcite. In review in the Journal of Sedimentary Research.

102. Smith J J-S, Garzione C, Passey B, Auerbach D, Eiler J, Rosario J and Jordan T (In review) Diachronous surface uplift of the Bolivian Altiplano revealed by clumped isotope paleothermometry. In review in Nature Geosciences.

103. Thiagarajan N, Adkins J, Eiler J (In press) Carbonate Clumped Isotope Thermometry of Deep-Sea Corals and Implications for Vital Effects. In press in P3.

Books edited:

Eiler, J.M. and Abers, G. (editors) ‘Inside The Subduction Factory’, Geophysical Monograph 138, in association with the American Geophysical Union. 2003.